[seq_read_fastq] Inconsistent sequence name: @XXXXXXXXX. Continue anyway.
This terminal printout slows down the file conversion, the possible solution is to remove the content after '+' in every third-line [1], like this:
@ the header info
ATCGATCG...
+
quality scores....
a easy python code to remove the content after '+' of 3rd line and write everything in another file:
======================================
#!/usr/bin/env python
writer = open("new_fastq_file.fastq", 'w')
with open("original_fastq_file.fastq") as f:
for line in f:
# change '+SRR' to the first 4~5 letters in 3rd line of your fastq file.
if '+SRR' in line:
line = '+\n'
writer.write(line)
#!/usr/bin/env python
writer = open("new_fastq_file.fastq", 'w')
with open("original_fastq_file.fastq") as f:
for line in f:
# change '+SRR' to the first 4~5 letters in 3rd line of your fastq file.
if '+SRR' in line:
line = '+\n'
writer.write(line)
======================================
